// Domain packs — what a workspace is modelling.
//
// The build flow (describe → pick a template → upload the most relevant docs →
// Claude proposes → you correct it) is identical for every domain. Only the
// nouns change. So a domain is *data*: templates, the files you'd start from,
// and the data products each hub would compute. Adding a domain should never
// mean touching the flow.
//
// 'company' reproduces the original Cascade Ridge content so the built
// workspace is unchanged. 'lab' is the second worked example — a high-resolution
// HLA typing lab — included to show the model is not a finance idea.

const DOM_IC = {
  grid: '<rect x="3" y="3" width="18" height="18" rx="2"/><line x1="3" y1="9" x2="21" y2="9"/><line x1="9" y1="21" x2="9" y2="9"/>',
  doc: '<path d="M14 2H6a2 2 0 0 0-2 2v16a2 2 0 0 0 2 2h12a2 2 0 0 0 2-2V8z"/><polyline points="14 2 14 8 20 8"/><line x1="8" y1="13" x2="16" y2="13"/><line x1="8" y1="17" x2="16" y2="17"/>',
  people: '<path d="M17 21v-2a4 4 0 0 0-4-4H5a4 4 0 0 0-4 4v2"/><circle cx="9" cy="7" r="4"/><path d="M23 21v-2a4 4 0 0 0-3-3.87"/><path d="M16 3.13a4 4 0 0 1 0 7.75"/>',
  globe: '<circle cx="12" cy="12" r="10"/><path d="M12 2a15.3 15.3 0 0 1 4 10 15.3 15.3 0 0 1-4 10 15.3 15.3 0 0 1-4-10 15.3 15.3 0 0 1 4-10z"/><line x1="2" y1="12" x2="22" y2="12"/>',
  trend: '<polyline points="22 7 13.5 15.5 8.5 10.5 2 17"/><polyline points="16 7 22 7 22 13"/>',
  megaphone: '<path d="M3 11l18-5v12L3 14v-3z"/><path d="M11.6 16.8a3 3 0 1 1-5.8-1.6"/>',
  clipboard: '<path d="M9 2h6a1 1 0 0 1 1 1v1h2a2 2 0 0 1 2 2v13a2 2 0 0 1-2 2H6a2 2 0 0 1-2-2V6a2 2 0 0 1 2-2h2V3a1 1 0 0 1 1-1z"/><path d="M9 4h6"/><path d="M8.5 12l2 2 4-4"/>',
  search: '<circle cx="11" cy="11" r="7"/><line x1="21" y1="21" x2="16.65" y2="16.65"/>',
  // Lab-specific
  helix: '<path d="M8 3c0 4 8 5 8 9s-8 5-8 9"/><path d="M16 3c0 4-8 5-8 9s8 5 8 9"/><line x1="9.5" y1="7" x2="14.5" y2="7"/><line x1="9.5" y1="17" x2="14.5" y2="17"/>',
  flask: '<path d="M9 3h6v5l4.5 9A2 2 0 0 1 17.7 20H6.3a2 2 0 0 1-1.8-3L9 8z"/><line x1="9" y1="3" x2="15" y2="3"/><line x1="7" y1="14" x2="17" y2="14"/>',
  link: '<path d="M10 13a5 5 0 0 0 7.5.5l3-3a5 5 0 0 0-7-7l-1.5 1.5"/><path d="M14 11a5 5 0 0 0-7.5-.5l-3 3a5 5 0 0 0 7 7L12 19"/>',
  mouse: '<circle cx="12" cy="14" r="6"/><circle cx="7" cy="7" r="3"/><circle cx="17" cy="7" r="3"/>',
  peptide: '<circle cx="5" cy="12" r="2"/><circle cx="12" cy="8" r="2"/><circle cx="19" cy="12" r="2"/><path d="M7 12l3-2.5M14 9l3 2"/>',
  badge: '<path d="M12 2l2.6 5.4 5.9.8-4.3 4.1 1.1 5.9L12 15.4 6.7 18.2l1.1-5.9L3.5 8.2l5.9-.8z"/>',
};

const PROXA_DOMAINS = {
  company: {
    key: 'company',
    label: 'A company',
    blurb: 'Finances, customers, projects, people — an operating business.',
    orgName: 'Cascade Ridge',
    mark: 'assets/crf-mark.svg?v=3',
    // "What are you modelling?" — the answer, in the domain's own words.
    modelLine: 'A mid-market food manufacturer: two plants, a customer book, a financial model.',
    groups: [
      { label: 'Org templates', items: [
        { id: 'finance', name: 'Finance', live: true,
          desc: 'Statements, working capital, budget vs. actual, capacity and forecast — from your financial model.',
          icon: DOM_IC.grid },
        { id: 'contracts', name: 'Contracts', live: false,
          desc: 'Customer agreements, renewals, obligations and pricing — from your MSAs and SOWs.',
          icon: DOM_IC.doc },
        { id: 'people', name: 'People', live: false,
          desc: 'Headcount, org, compensation and safety — from your roster and payroll exports.',
          icon: DOM_IC.people },
        { id: 'commercial', name: 'Commercial', live: false,
          desc: 'A 360 per customer — contracts, pipeline, volume, revenue and margin, merged.',
          icon: DOM_IC.globe },
        { id: 'sales', name: 'Sales', live: false,
          desc: 'Pipeline, bookings, win-rate and forecast across the commercial organization.',
          icon: DOM_IC.trend },
        { id: 'marketing', name: 'Marketing', live: false,
          desc: 'Campaigns, spend, funnel and attribution across channels.',
          icon: DOM_IC.megaphone },
      ] },
      { label: 'Project templates', items: [
        { id: 'diligence', name: 'Diligence', live: true,
          desc: 'Upload a DDQ — Claude turns every request into a tracked data product, answered from the model.',
          icon: DOM_IC.clipboard },
        { id: 'audit', name: 'Audit', live: false,
          desc: 'A PBC list, encoded — requests, evidence and status against your model.',
          icon: DOM_IC.search },
      ] },
    ],
    // Step 2 — the docs most relevant to start with.
    files: [
      { name: 'CascadeRidge-Financial-Data.xlsx', type: 'xlsx', bytes: 252366 },
      { name: 'CascadeRidge-Financial-Model.xlsx', type: 'xlsx', bytes: 151606 },
      { name: 'CascadeRidge-HR-Roster.xlsx', type: 'xlsx', bytes: 80019 },
      { name: 'CascadeRidge-Customer-Report.xlsx', type: 'xlsx', bytes: 97829 },
      { name: 'entities.json', type: 'json', bytes: 592209 },
    ],
    uploadHint: 'Excel workbooks, financial models, data exports',
    // What the assistant asks you to hand over, in the domain's own words.
    sourceNoun: 'your financial model',
    onboard: {
      title: 'Build your Finance hub',
      body: 'Upload your financial model, general ledger and exports. Claude reads them and builds the '
        + 'data products below — each traced back to your files, nothing invented.',
    },
    products: [
      ['P&L & Margin Bridge', 'Revenue growth & the gross-margin story'],
      ['Three-Statement Model', 'IS / BS / CF + forecast, balanced'],
      ['Working Capital & AR', 'Aging, DSO, collection health'],
      ['Budget vs Actual', 'Plan-vs-actual variance'],
      ['Customer Concentration', 'Revenue mix & top-10 exposure'],
      ['Capacity & Utilization', 'Line-level utilization'],
      ['Labor Bridge', 'Headcount & payroll ties'],
      ['Debt & Capital', 'Amortization, capex, distributions'],
    ],
    // Specifics Claude proposes after reading the sources — Draft until validated.
    // Company: the existing Cascade Ridge set lives in model_context.jsx.
    derivedSpecific: null,
  },

  lab: {
    key: 'lab',
    label: 'A research lab',
    blurb: 'Specimens, assays, cohorts, results — work that produces findings, not revenue.',
    orgName: 'HLA Typing Lab',
    mark: 'assets/lab-mark.svg?v=1',
    modelLine: 'A high-resolution HLA typing lab: sequence-based typing feeding transplant '
      + 'matching, vaccine epitope work and humanized-mouse characterization.',
    groups: [
      { label: 'Lab templates', items: [
        { id: 'typing', name: 'Typing', live: true,
          desc: 'Specimens, runs, sequences and allele assignments — every call stamped with its method version and reference release.',
          icon: DOM_IC.helix },
        { id: 'studies', name: 'Studies & Cohorts', live: false,
          desc: 'Who requested typing, for which cohort, at what resolution — and what was published from it.',
          icon: DOM_IC.clipboard },
        { id: 'matching', name: 'Matching', live: false,
          desc: 'Donor–recipient pairs: match grade by locus, mismatch vector, DPB1 permissiveness.',
          icon: DOM_IC.link },
        { id: 'ligands', name: 'Ligands & Epitopes', live: false,
          desc: 'Eluted peptides mapped to their restricting allele, and population coverage for a candidate set.',
          icon: DOM_IC.peptide },
        { id: 'animals', name: 'Animal Models', live: false,
          desc: 'Transgene alleles, graft donor typing and chimerism — which animals are valid for which study.',
          icon: DOM_IC.mouse },
        { id: 'method', name: 'Method & Validation', live: false,
          desc: 'Method versions, concordance, first-pass success and proficiency testing over the life of the assay.',
          icon: DOM_IC.badge },
      ] },
      { label: 'Project templates', items: [
        { id: 'reresolve', name: 'Reference Re-resolution', live: false,
          desc: 'A new IMGT/HLA release lands — re-resolve the archive and report every call that changed.',
          icon: DOM_IC.flask },
        { id: 'manuscript', name: 'Manuscript Support', live: false,
          desc: 'The typing tables, frequencies and methods paragraph for a paper, generated from the model.',
          icon: DOM_IC.doc },
      ] },
    ],
    files: [
      { name: 'HLA-Assignments-2009-2026.csv', type: 'csv', bytes: 4180000 },
      { name: 'SBT-Run-Manifest.xlsx', type: 'xlsx', bytes: 386000 },
      { name: 'IMGT-HLA-Allelelist-3.60.0.txt', type: 'txt', bytes: 1240000 },
      { name: 'Study-Cohorts.xlsx', type: 'xlsx', bytes: 94000 },
      { name: 'KIR-Genotypes.csv', type: 'csv', bytes: 210000 },
      { name: 'sequence-traces.zip', type: 'zip', bytes: 88400000 },
    ],
    uploadHint: 'Assignment exports, run manifests, reference releases, trace archives',
    sourceNoun: 'your assignment history and run manifests',
    onboard: {
      title: 'Build your Typing hub',
      body: 'Upload your assignment history, run manifests and the reference release you call against. '
        + 'Claude reads them and builds the data products below — every allele call traced to the run '
        + 'and the release that produced it, nothing invented.',
    },
    products: [
      ['Assignment Ledger', 'Every call, stamped with method version & IMGT release'],
      ['Ambiguity Queue', 'What needs a human at the trace vs. resolvable by convention'],
      ['Re-resolution Diff', 'New release → which subjects’ calls actually changed'],
      ['KIR–HLA Ligand Pairing', 'C1/C2, Bw4/Bw6 and KIR genotype, derived'],
      ['Cohort Allele Frequencies', 'By study and self-reported population'],
      ['Match Grades', '8/8, 10/10, 12/12 + DPB1 permissiveness per pair'],
      ['Method Performance', 'Concordance & first-pass rate by locus and version'],
      ['QC & Proficiency Trend', 'PT results, discordances, reagent-lot effects'],
    ],
    // What Claude proposes after reading the lab's sources. All Draft — these are
    // exactly the judgments a supervisor has to confirm or throw out, which is the
    // point of the human-in-the-loop step.
    derivedSpecific: [
      { title: 'Pre-2014 calls came off the earlier primer set',
        judgment: 'Assignments from method v1 (2009–2013) used the pre-v2 primer set, where DRB1 exon 2 first-pass success was materially lower. Read the historical ambiguity rate as a property of the method, not of sample quality — and do not compare it to post-v2 performance without splitting on version.',
        affects: ['Assignment Ledger', 'Method Performance'], owner: 'Lab supervisor', status: 'Draft',
        derivedFrom: 'How it is normally built' },
      { title: 'DPB1 phase ambiguity is expected, not a failure',
        judgment: 'For heterozygotes, cis/trans phase ambiguity at DPB1 is inherent to sequence-based typing. Route it to allele-specific amplification rather than flagging the run as failed or escalating it as a discordance.',
        affects: ['Ambiguity Queue', 'Match Grades'], owner: 'Lab supervisor', status: 'Draft',
        derivedFrom: 'SBT vs. NGS' },
      { title: 'The 3.60.0 diff is renaming, not re-typing',
        judgment: 'Re-resolving the archive against the current release changes the names of alleles already called, and expands some ambiguity strings. Report it as a nomenclature diff; only a change in the resolved allele pair means the subject’s type actually changed.',
        affects: ['Re-resolution Diff', 'Assignment Ledger'], owner: 'Lab supervisor', status: 'Draft',
        derivedFrom: 'Checks that must always hold' },
      { title: 'Consent scope differs by study — check before reuse',
        judgment: 'Some cohorts permit secondary use of their typing and some do not, so the archive is not uniformly reusable. Treat consent scope as a property of the study, and gate cross-study frequency work on it.',
        affects: ['Cohort Allele Frequencies', 'Studies & Cohorts'], owner: 'Lab supervisor', status: 'Draft',
        derivedFrom: 'The data products it typically holds' },
    ],
    // ── The built workspace ────────────────────────────────────────────────
    // Same three tiers as Cascade Ridge: two hubs built and in use, the rest
    // shaded as identified-but-not-built. Present so the lab is a working
    // workspace rather than only an onboarding walkthrough.
    built: {
      rail: [
        { key: 'assay', label: 'Assay', abbr: 'ASSAY', hubs: ['Typing'] },
        { key: 'studies', label: 'Studies', abbr: 'STDY', hubs: ['Studies & Cohorts'] },
      ],
      hubs: [
        { tier: 'active', id: 'Typing', name: 'Typing', live: true,
          desc: 'Specimens, runs and allele assignments — every call re-derivable against the current release.',
          icon: DOM_IC.helix },
        { tier: 'active', id: 'Studies & Cohorts', name: 'Studies & Cohorts', live: true,
          desc: 'Who asked, for which cohort, at what resolution — and whether it can be reused.',
          icon: DOM_IC.clipboard },
        { tier: 'planned', id: 'matching', name: 'Matching',
          desc: 'Donor–recipient pairs: match grade by locus, mismatch vector, DPB1 permissiveness.',
          icon: DOM_IC.link },
        { tier: 'planned', id: 'method', name: 'Method & Validation',
          desc: 'Concordance, first-pass success and proficiency testing over the life of the assay.',
          icon: DOM_IC.badge },
        { tier: 'planned', id: 'ligands', name: 'Ligands & Epitopes',
          desc: 'Eluted peptides mapped to their restricting allele, and coverage for a candidate set.',
          icon: DOM_IC.peptide },
        { tier: 'planned', id: 'animals', name: 'Animal Models',
          desc: 'Transgene alleles, graft donor typing and chimerism — which animals suit which study.',
          icon: DOM_IC.mouse },
      ],
      // Same row shapes as the Cascade Ridge constants in workspace.jsx, so the
      // Team and Org tabs render these without any change to those components.
      emailDomain: 'hlalab.org',
      team: [
        { id: 'LAB-01', name: 'Steven Cate', title: 'HLA Typing Lab Supervisor', role: 'owner', you: true,
          photo: 'assets/avatar.jpg', hubs: ['Typing', 'Studies & Cohorts'], seen: 'Active now', seenTs: 100 },
        { id: 'LAB-02', name: 'Wren Okonkwo', title: 'Principal Investigator', role: 'admin',
          hubs: ['Typing', 'Studies & Cohorts'], seen: '2 hours ago', seenTs: 95 },
        { id: 'LAB-03', name: 'Maya Iyer', title: 'Medical Technologist · Sequencing', role: 'editor',
          hubs: ['Typing'], seen: 'Active now', seenTs: 98 },
        { id: 'LAB-04', name: 'Dara Halloran', title: 'Medical Technologist · Resolution', role: 'editor',
          hubs: ['Typing'], seen: 'Yesterday', seenTs: 88 },
        { id: 'LAB-05', name: 'Priya Vasquez', title: 'Bioinformatician', role: 'editor',
          hubs: ['Typing'], seen: 'Yesterday', seenTs: 86 },
        { id: 'LAB-06', name: 'Rune Lindqvist', title: 'Study Coordinator', role: 'editor',
          hubs: ['Studies & Cohorts'], seen: '3 days ago', seenTs: 78 },
        { id: 'LAB-07', name: 'Tomas Beringer', title: 'Vivarium Manager', role: 'viewer',
          hubs: [], seen: '2 weeks ago', seenTs: 60 },
        { id: 'LAB-08', name: 'Hana Petit', title: 'Registry Liaison', role: 'viewer', pending: true,
          hubs: ['Studies & Cohorts'], seen: null, seenTs: null },
      ],
      // One root, like Cascade Ridge's Executive Office — the chart renders a
      // single tree.
      org: [
        { id: 'GRP-01', dept: 'Laboratory',         parent: null,     head: 'LAB-02', focus: 'The lab and its research program', hc: 12 },
        { id: 'GRP-02', dept: 'Typing Core',        parent: 'GRP-01', head: 'LAB-01', focus: 'The assay of record',              hc: 5, hub: 'Typing' },
        { id: 'GRP-03', dept: 'Sequencing',         parent: 'GRP-02', head: 'LAB-03', focus: 'Runs, reagent lots, instruments',  hc: 2 },
        { id: 'GRP-04', dept: 'Resolution',         parent: 'GRP-02', head: 'LAB-04', focus: 'Ambiguity at the bench',           hc: 1 },
        { id: 'GRP-05', dept: 'Bioinformatics',     parent: 'GRP-02', head: 'LAB-05', focus: 'Calling & re-resolution',          hc: 1 },
        { id: 'GRP-06', dept: 'Study Coordination', parent: 'GRP-01', head: 'LAB-06', focus: 'Consent, manifests, delivery',     hc: 1, hub: 'Studies & Cohorts' },
        { id: 'GRP-07', dept: 'Vivarium',           parent: 'GRP-01', head: 'LAB-07', focus: 'Humanized mouse colonies',         hc: 2 },
      ],
      about: 'A high-resolution HLA typing lab. Sequence-based typing feeds transplant '
        + 'matching, vaccine epitope work and humanized-mouse characterization — the same '
        + 'assignments read three different ways, which is why they are modelled once.',
    },
  },
};

const PROXA_DOMAIN_ORDER = ['company', 'lab'];

function proxaDomain(key) {
  return PROXA_DOMAINS[key] || PROXA_DOMAINS.company;
}

// The workspace's identity mark — each workspace reads as itself in the rail,
// the banner and the switcher.
function proxaMark(key) {
  return proxaDomain(key).mark;
}

window.PROXA_DOMAINS = PROXA_DOMAINS;
window.PROXA_DOMAIN_ORDER = PROXA_DOMAIN_ORDER;
window.proxaDomain = proxaDomain;
window.proxaMark = proxaMark;